Step 2 - Set up a Starting Forcefield
Of course we need a forcefield to describe our ionic liquid, and we’ll focus on the widely-used parameters of Padua and Canongia-Lopes. In Dissolve this forcefield is implemented in two distinct parts, one covering cations and one covering anions.
EMIM Cation
Go to the EMIM species tab
Species ⇨ Add Forcefield Terms…
From the available forcefields choose
PCL2019/Cations
and click
We will use the default Determine atom types for all atoms option to add atom types for every atom in the species, so click
There will be no conflicts with existing atom types as there are no atom types already defined, so click
For the intramolecular terms we want to assign them and reduce to master terms (the default settings) so click
to proceed
There will be no conflicts with existing master terms, so click
to exit the wizard
Now we have a full description of our cation - if you look on the Forcefield section on the species tab you can see that Dissolve has calculated the total charge on the molecule from both atom types and species atoms. Both of these should be +1
.
You’ll notice that there are warning icons next to the total species atom and atom type charges. These are there only to indicate that the total charge is non-zero - we know that our species are ions, so we ignore these warnings.
OAc Anion
Now for the anion:
Go to the Acetate species tab
Species ⇨ Add Forcefield Terms…
From the available forcefields choose
PCL2019/Anions
and click
We will use the default Determine atom types for all atoms option to add atom types for every atom in the species, so click
At this point you will see that there is a conflict between one of the atom types Dissolve wants to apply to the OAc species (HC
) and those that we’ve just created on the cation. While from a forcefield perspective the atom type HC
is transferable between the cation and the anion, when we’re thinking about refining pair potentials against experimental data it is probably wise to separate it into two types so that we can allow both to vary independently in the refinement process. So:
Select the
HC
entry in the atom types list
Click the
and type inA
. Click to change the name fromHC
toHCA
to resolve the naming conflict.
Click
to continue
For the intramolecular terms we want to assign them and reduce to master terms (the default settings) so click
to proceed
Click
to exit the wizard