Padua & Canongia Lopes (2019)
General Ionic Liquids
Provides
| Forcefield Name | Description |
|---|---|
PCL2019/Anions |
Ionic liquid anions |
PCL2019/Cations |
Ionic liquid cations |
Overview
The complete ionic liquids forcefield of Padua and Canongia Lopes, as found at https://github.com/agiliopadua/ilff (commit 1df07bd), covering a variety of normal and fluorinated cations and anions.
Implementation Notes
Atom Types
- Renamed trifluoroacetate oxygen to
O2Fin order to distinguish it from normal acetateO2as it has differing Lennard-Jones parameters. - For alkylsulphates (RSO4-) the bridging oxygen is wrongly labelled as
OS4in the structures pdf (should beOC4). - Alkane-style carbons are labelled
CT2(two hydrogens) andCT3(three hydrogens). - Alkylimidazolium hydrogen on ring nitrogen
HNA’s original equivalent type wasHA, but this is mapped toHNAsince its Lennard-Jones parameters are zero (while those for otherHAare not). - Alkylimidazolium carbon next to ring nitrogen with H attached (
CW) has different Lennard-Jones parameters to dialkylimidazoliumCW, so this is mapped toCWHhere. - Lennard-Jones parameters for
CS3andCS4are mapped toCT, but have slightly different epsilon values in the original forcefield (0.276 vs 0.27614) - this is assumed to be rounding, and the value listed to 5 d.p. is used. - Similarly,
HS3andHS4have a Lennard-Jones epsilon of 0.126, but the mapped typeHChas an epsilon of 0.12552. Again this is assumed to be a rounding error, and the 5 d.p. value is used. - Tosylate hydrogen
HTSis mapped toHCbut is listed as having Lennard-Jones sigma of 2.42, which is more consistent with an aromatic hydrogen (e.g.HA). The expected value of 2.5 for an aliphatic hydrogen (i.e.HC) is used. - OPLS-AA alcohol carbon (CTO) and hydrogen (H10) not implemented - see OPLSAA2005/Alcohols for the full description.
- Phosphonium P renamed from
P3toP4for consistency withN4and https://github.com/agiliopadua/ilff/blob/master/ilff_structures.pdf. - Polarisable
C1Anot implemented.
Intramolecular Parameters
- Bond constraints are implemented as harmonic bonds with the specified force parameters.
- Trifluoroacetate bond parameters are missing in the
il.fffile, so are taken fromexamples/old.il.ff. - Benzylimidazolium AMBER wildcard torsions
CA-CT-NA-CRandNA-CT-CA-CAare implemented asNoFormtorsions, and the missingCA-CT-NA-CWhas been added (e.g. found inbenzc1im). - Alkoxy torsion
NA-CT-CT-OHtaken fromold.il.ff.